Module AnalyseMapping
Classes
CustomRead
ReadID
TPRead
Functions
CheckForSameAlignments
CompareAlignments
ComputeRQScore
CreateCompareList
GetCompletePath
GetOrderDictionary
ReadArtificialSAMfileHTSeq
ReadFromTab
ReadSAMnoMem
SkipHeader
extendReadDic
getAlignmentLength
getAllID
getCustomRead
getHammingdistance
getMisGap
getNextLine
getNumberOf
getRanks
getTPRead
getmean
getsum
initOutFiles
isSaneAlignment
loadpickle
readInput
readReadQualities
readSAMline
returnIndex
returnSequence
savepickle
writeToTabArt
writeToTabRef
Variables
AlignedReadsdic
__package__
algnedToArt
algnedToRef
alngts
[hide private]