|
HMMER
User's Guide
|
|
Dept. of Genetics |
WashU |
Medical School |
Sequencing Center |
CGM |
IBC|
|
Eddy lab |
Internal (lab only) |
HMMER |
PFAM |
tRNAscan-SE |
Software |
Publications
|
Next: sreformat - convert sequence
Up: Manual pages
Previous: getseq - get a
Subsections
seqstat [options] seqfile
seqstat reads a sequence file
seqfile in any supported format, and shows a number of simple statistics
about it. Supported formats include (but are not limited to) the unaligned
formats FASTA, Genbank, EMBL, SWISS-PROT, PIR, and GCG, and the aligned
formats SELEX, Clustal, and GCG MSF. The printed statistics include the
name of the format, the residue type of the first sequence (protein, RNA,
or DNA), the number of sequences, the total number of residues, and the
average and range of the sequence lengths.
- [-a ] Show additional
verbose information: a table with one line per sequence showing name,
length, and description line. These lines are prefixed with a * character
to enable easily grep'ing them out and sorting them.
- [-h ] Print brief help;
includes version number and summary of all options, including expert options.
Next: sreformat - convert sequence
Up: Manual pages
Previous: getseq - get a
Direct comments and questions to <eddy@genetics.wustl.edu>