|
HMMER
User's Guide
|
|
Dept. of Genetics |
WashU |
Medical School |
Sequencing Center |
CGM |
IBC|
|
Eddy lab |
Internal (lab only) |
HMMER |
PFAM |
tRNAscan-SE |
Software |
Publications
|
Next: hmmpfam - search a
Up: Manual pages
Previous: hmmfetch - retrieve an
Subsections
hmmindex [options] database
hmmindex is a utility that
creates a binary GSI ("generic sequence index" format) index for an HMM
database file called database. The new index file is named database.gsi.
A GSI index file is required for hmmfetch to work, and also for the PVM
implementation of hmmpfam.
- [-h ] Print brief help; includes version
number and summary of all options, including expert options.
Next: hmmpfam - search a
Up: Manual pages
Previous: hmmfetch - retrieve an
Direct comments and questions to <eddy@genetics.wustl.edu>